Agrivida is commited to developing biofuels and chemicals based upon agricultural feedstocks. To this end we encourage our team members to publish their research in peer-reviewed journals as an accepted forum for sharing new discoveries. We hope that these reports will benefit the larger scientific community and contribute to making the production of renewable fuels and chemicals a commercial reality. Below is a list of relevant publications by Agrivida's team and advisory board sorted by topic area.

Ethanol Production

Wyman CE, Dale BE, Elander Rt, Holtzapple M, Ladisch MR, Lee YY. 2005. Comparative sugar recovery data from laboratory scale application of leading pretreatment technologies to corn stover. Bioresour technol. 96(18):2026-32.

Mosier N, Hendrickson R, Ho N, Sedlak M, Ladisch MR. 2005. Optimization of pH controlled liquid hot water pretreatment of corn stover. Bioresour technol. 96(18):1986-93.

Wyman CE, Dale BE, Elander Rt, Holtzapple M, Ladisch MR, Lee YY. 2005. Coordinated development of leading biomass pretreatment technologies. Bioresour technol. 96(18):1959-66.

Mosier NS, Hendrickson R, Brewer M, Ho N, Sedlak M, Dreshel R, Welch G, Dien BS, Aden A, Ladisch MR. 2005. Industrial scale-up of pH-controlled liquid hot water pretreatment of corn fiber for fuel ethanol production. Appl Biochem Biotechnol. 125(2):77-97.

Mosier N, Wyman C, Dale B, Elander R, Lee YY, Holtzapple M, Ladisch M. 2005. Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour technol. 96(6):673-86.

Sarikaya A, Ladisch MR. 1999. Solid-state fermentation of lignocellulosic plant residues from Brassica napus by Pleurotus ostreatus. Appl Biochem Biotechnol. 82(1):1-15.

Mosier NS, Wilker JJ, Ladisch MR. 2004. Rapid chromatography for evaluating adsorption characteristics of cellulase binding domain mimetics. Biotechnol Bioeng. 86(7):756-64.

Mosier NS, Ladisch CM, Ladisch MR. 2002. Characterization of acid catalytic domains for cellulose hydrolysis and glucose degradation. Biotechnol Bioeng. 79(6):610-8.

Mosier NS, Sarikaya A, Ladisch CM, Ladisch MR. 2001. Characterization of dicarboxylic acids for cellulose hydrolysis. Biotechnol Prog. 17(3):474-80.

Mosier NS, Hall P, Ladisch CM, Ladisch MR. 1999. Reaction kinetics, molecular action, and mechanisms of cellulolytic proteins. Adv Biochem Eng Biotechnol. 65:23-40.

Sarikaya A, Ladisch MR. 1997. Mechanism and potential applications of bio-ligninolytic systems in a CELSS. Appl Biochem Biotechnol. 62(2-3):131-49.

Kohlmann KL, Westgate P, Velayudhan A, Weil J, Sarikaya A, Brewer MA, Hendrickson RL, Ladisch MR. 1996. Enzyme conversion of lignocellulosic plant materials for resource recovery in a Controlled Ecological Life Support System. Adv Space Res. 18(1-2):251-65.

Velayudhan A, Kohlmann KL, Westgate PJ, Ladisch MR. 1995. Analysis of plant harvest indices for bioregenerative life support systems. Enzyme Microb technol. Oct;17:907-10.

Weil J, Westgate P, Kohlmann K, Ladisch MR. 1994. Cellulose pretreatments of lignocellulosic substrates. Enzyme Microb technol. Nov;16(11):1002-4.

Goldberg, Ray A. "Gruppo Ferruzzi: Economics, Politics and Ethanol." Harvard Business School Case 588-002.

Porter JE, Sarikaya A, Herrmann KM, Ladisch MR. 1992. Effect of pH on subunit association and heat protection of soybean alpha-galactosidase. Enzyme Microb technol. Aug;14:609-13.

Ladisch MR, Hong J, Voloch M, tsao Gt. 1981. Cellulase kinetics. Basic Life Sci. 18:55-83.

Gong CS, Ladisch MR, tsao Gt. 1977. Cellobiase from trichoderma viride: purification, properties, kinetics, and mechanism. Biotechnol Bioeng. Jul;19(7):959-81.

Ladisch, M.R., Dyck, K., 1979. Dehydration of ethanol: new approach gives positive energy balance. Science, 205:898-900.

Ladisch, M.R., M. Voloch, J. Hong, P. Blenkowski, G.t. tsao, 1984. Cornmeal Adsorber for Dehydrating Ethanol Vapors. Ind. Eng. Chem. Process Des. Dev. 23: 437-443.

Industrial Biotechnology

R. Michael Raab, Keith tyo, Gregory Stephanopoulos. 2005. Metabolic Engineering, Advances in Biochemical Engineering/ Biotechnology, Springer-Verlag GmbH; Volume 100:1-16

Rudrabhatla Sairam, Siva Chennareddy, Madasamy Parani, Shulu Zhang, Diaa Al-Abed, Wissam Abou-Alaiwi and Stephen Goldman. 2005. OPBC Symposium: Maize 2004 & Beyond - Plant Regeneration, Gene Discovery and Genetic Engineering of Plants for Crop Improvement. In Vitro Cell. Dev. Biol. Plant 41, 411-423

R. Michael Raab, Gregory Stephanopoulos. 2004. "Dynamics of Gene Silencing by RNA Interference," Biotechnology & Bioengineering, 88(1):121-132.

William A. Schmitt Jr., R. Michael Raab, Gregory Stephanopoulos. 2004. "Elucidation of Gene Interaction Networks through time-lagged Correlation Analysis of transcriptional Data," Genome Research, 14(8):1654-1663

H. de la Vega, Specht C.A., Liu Y. and P.W. Robbins. 1998. Chitinases are a multi-gene family in Aedes, Anopheles and Drosophila. Insect Molecular Biology 7: 233-239

K. Jensen, I. Rigoutsos, & G. Stephanopoulos. 2003. "Syntactic Pattern Discovery as a Generic tool inSystems Biology," Proceedings of the American Chemical Society Annual Meeting.

Mishra, C., C.E. Semino, K.J. McCreath, H. de la Vega, B.J. Jones, C.A. Specht and P.W. Robbins 1997. Cloning and expression of two chitin deacetylase genes of Saccharomyces cerevisiae. Yeast 13: 327-336

H. de la Vega, C.A. Specht, C.E. Semino, P.W. Robbins, D. Eichenger, D. Caplivsky, S. Ghosh and J. Samuelson. 1997. Cloning and expression of chitinases of Entamoeba. Molecular and Biochemical Parasitology 85: 139-147

B. Rosenthal, Z. Mai, D. Caplivski, S. Ghosh, H. de la Vega, t. Graf and J. Samuelson 1997. Evidence for the bacterial origin of genes encoding fermentation enzymes of the amitochondriate protozoan parasite Entamoeba histolytica.. Journal of Bacteriology 179: 3736-3745.

H. de la Vega, C.A. Specht, A. Chau, C.E. Semino, P.W. Robbins, D. Eichinger, D. Caplivski, S. Ghosh and J. Samuelson 1997. Cyst-specific exochitinases of Entamoeba contain unique hydrophilic repeats at their amino termini Arch of Med Res 28: suppl. S143-s146

R.V. Sairam and C.S. Prakash. 2005. Can Agricultural Biotechnology Contribute to Global Food Security? In Vitro Cell. Dev. Biol.-Plant - 41, 424-430

Hood, E.E., A. Kusnadi, Z. Nikolov and J.A. Howard. 1999. Molecular Farming of Industrial Proteins from transgenic Maize. In: P. Kolodziejczyk, Shahidi, et al eds., Chemicals via Higher Plant Bioengineering, Kluwer Academic/Plenum Publishers, N.Y.

Hood, E.E., Z.L. Nikolov 2002 Making therapeutic proteins in transgenic corn. tutorial: Manufacturing low-cost, high-purity, clinical-grade proteins in corn Genetic Engineering News 22:48

Hood, E.E. 2002 From Green Plants to Industrial Enzymes Enzyme and Microbial technology 30:279-283

Hood, E.E., M.R. Bailey, K. Beifuss, M. Horn, M. Magallanes-Lundback, C. Drees, D. E. Delaney, R. Clough and J. A. Howard 2003 Criteria for high-level expression of a fungal laccase gene in transgenic maize Plant Biotechnology Journal. 1, 129-140

Bailey, M.R., S.L. Woodard, E. Callaway, K Beifuss, D. Delaney, M. Magallanes-Lundback, J. Lane, M.E. Horn, M. Ward, F. Van Gastel, J.A. Howard, E.E. Hood 2004 Improved recovery of active recombinant laccase from maize seed Applied Microbiology and Biotechnology 63(4):390-7, (2003 Epub)

Woodard, S.L., J.M. Mayor, M.R. Bailey, D.K. Barker, R.t. Love, J.R. Lane, D.E. Delaney, J.M. McComas-Wagner, H.D. Mallubhotla, E.E. Hood, L.J. Dangott, S.E. tichy and J.A. Howard. 2003 Maize-derived bovine trypsin: Characterization of the first large-scale, commercial protein product from ransgenic plants. Biotechnology and Applied Biochemistry 38:123-130

Hood, E.E. and Woodard, S. 2002. Industrial proteins produced from plants. In: Plants as Factories for Protein Production. E.E. Hood and J. A. Howard, Eds., Kluwer Academic Publishers, Dordrecht, the Netherlands. pp. 119-135.

Hood, E.E., M.E. Horn and J.A. Howard. 2003. "Production and Application of Proteins from transgenic Plants" In: I. Vasil, Ed., Plant Biotechnology 2002 and Beyond, Proceedings of the 10th IAPtC&B Congress, Orlando, FL. Kluwer Academic Publishers, Dordrecht, the Netherlands. pp. 377-382.

Huang tt, taylor DG, Sedlak M, Mosier NS, Ladisch MR. 2005. Microfiber-directed boundary flow in press-fit microdevices fabricated from self-adhesive hydrophobic surfaces. Anal Chem. Jun 1;77(11):3671-5.

Wachenheim DE, Patterson JA, Ladisch MR. 2003. Analysis of the logistic function model: derivation and applications specific to batch cultured microorganisms. Bioresour technol. Jan;86(2):157-64.

Basak S, Velayudhan A, Ladisch MR. 1995. Simulation of diauxic production of cephalosporin C by Cephalosporium acremonium: lag model for fed-batch fermentation. Biotechnol Prog. 11(6):626-31.

Keim C, Li C, Ladisch CM, Ladisch M. 2002. Modeling pore size distribution in cellulose rolled stationary phases. Biotechnol Prog. Mar-Apr;18(2):317-21.

Li C, Ladisch CM, Yang Y, Hendrickson R, Keim C, Mosier N, Ladisch MR. 2002. Optimal packing characteristics of rolled, continuous stationary-phase columns. Biotechnol Prog. Mar-Apr;18(2):309-16.

Beery KE, Ladisch MR. 2001. Chemistry and properties of starch based desiccants. Enzyme Microb technol. May 7;28(7-8):573-581.

Keim C, Ladisch M. New system for preparative electrochromatography of proteins. Biotechnol Bioeng. 2000 Oct 5;70(1):72-81.

Basak SK, Ladisch MR. 1995. Correlation of electrophoretic mobilities of proteins and peptides with their physicochemical properties. Anal Biochem. Mar 20;226(1):51-8.

Streicher, S.L., K.t. Shanmugam, F.M. Ausubel, C. Morandi, and R. Goldberg (1974) Regulation of nitrogen fixation in Klebsiella pneumoniae: evidence for a role for glutamine synthetase as a regulator of nitrogenase synthesis. J. Bacteriol. 120:815-821.

Shanmugam, K.t., S.L. Streicher, C. Morandi, F.M. Ausubel, R. Goldberg, and R.C. Valentine (1976) A model for genetic regulation of dinitrogen fixation (nif) in Klebsiella pneumoniae. In: Proceedings of the First International Symposium on Nitrogen Fixation, Vol. 2 (W.E. Newton and C.J. Nyman, eds.) Washington Univ. Press, Pullman, Washington, pp. 313-319.

Bedbrook, J., and F.M. Ausubel (1976) Recombination between bacterial plasmids leading to the formation of plasmid multimers. Cell 9:707-716.

Ruvkun, G.B., and F.M. Ausubel (1981) A general method for site directed mutagenesis in prokaryotes: Construction of mutations in symbiotic nitrogen fixation genes of Rhizobium meliloti. Nature 289:85-88.

Ausubel, F.M., and F.C. Cannon (1981) Molecular genetic analysis of Klebsiella pneumoniae nitrogen-fixation (nif) genes. Cold Spring Harbor Symp. on Quant. Biol. 45:487-492.

Ruvkun, G.B., S.R. Long, H.M. Meade, and F.M. Ausubel (1981) Molecular genetics of symbiotic nitrogen fixation. Cold Spring Harbor Symp. on Quant. Biol. 45:492-499.

Sundaresan, V., and F.M. Ausubel (1981) Nucleotide sequence of the gene coding for the nitrogenase iron protein from Klebsiella pneumoniae. J. Biol. Chem. 256:2808-2812.

Ruvkun, G.B., and F.M. Ausubel (1981) Physical mapping of symbiotic nitrogen fixation genes in Rhizobium meliloti. In: Current Perspectives in Nitrogen Fixation (A.H. Gibson and W.E. Newton, eds.) Australian Academy of Science, Canberra, pp. 161-164.

Ausubel, F.M., and G.B. Ruvkun (1981) A general method for site-directed mutagenesis in Gram negative prokaryotes: Isolation of nitrogen fixation mutants in Rhizobium meliloti. In: Microbiology 1981 (D. Schlessinger, ed.) American Society for Microbiology, Washington, D.C., pp. 124-127.

Long, S.R., H.M. Meade, and F.M. Ausubel (1981) the use of transposon mutagenesis in the molecular genetic analysis of symbiotic nitrogen fixation. In: Microbiology 1981 (D. Schlessinger, ed.) American Society for Microbiology, Washington, D.C., pp. 89-92.

de Bruijn, F.J., and F.M. Ausubel (1981) the cloning and transposon tn5 mutagenesis of the glnA region of Klebsiella pneumoniae: Identification of glnR, a gene involved in the regulation of the nif and hut operons. Molec. Gen. Genet. 183:289-297.

Molecular farming

Hood, E.E. and J. Howard, Eds. Plants as Factories for Protein Production. 2002. Kluwer Academic Publishers, Dordrecht, the Netherlands. 209 pp.

Hood, E.E., D.R. Witcher, S. Maddock, t. Meyer, C. Baszczynski, M. Bailey, P. Flynn, J. Register, L. Marshall, D. Bond, E. Kulisek, A. Kusnadi, R. Evangelista, Z. Nikolov, C. Wooge, R.J. Mehigh, R. Hernan, W.K. Kappel, D. Ritland, C.P. Li and J.A. Howard 1997 Commercial production of avidin from transgenic maize: Characterization of transformant, production, processing, extraction and purification. Molecular Breeding 3:291-306

Witcher, D.R., E.E. Hood, D. Peterson, M. Bailey, D. Bond, A. Kusnadi, R. Evangelista, Z. Nikolov, C. Wooge, R. Mehigh, W. Kappel, J.C. Register, and J.A. Howard 1998 Commercial production of β-glucuronidase (GUS): A model system for the production of proteins in plants. Molecular Breeding 4:301-312

Kusnadi, A.R., E.E. Hood, D.R. Witcher, J.A. Howard and Z.L. Nikolov 1998 Production and purification of two recombinant proteins from transgenic corn Biotechnol. Prog. 14:149-155

Kusnadi, AR, RL Evangelista, EE Hood, JA Howard and ZL Nikolov 1998 Processing of transgenic corn seed and its effect on the recovery of recombinant β-Glucuronidase Biotechnol and BioEngineering 60:44-52

Zhong, G.Y., D. Peterson, D.E. Delaney, M. Bailey, D.R. Witcher, J.C. Register III, D. Bond, C.-P. Li, L. Marshall, E. Kulisek, D. Ritland, t. Meyer, E.E. Hood and J.A. Howard 1999 Commercial production of aprotinin in transgenic maize seeds Molecular Breeding 5: 345-356

Hood, E. and J. Howard 1999 Protein products from transgenic plants Agro-Food-Industry Hi-tech, 3, Vol.10, May/June pp. 35-36

Hood, E. and J. Jilka 1999 Plant based production of xenogenic proteins Current Opinion in Biotechnology, 10:4, 382-386

Jilka, J.M., E.E. Hood, R. Dose and J.A. Howard 1999 the benefits of proteins produced in transgenic plants. AgBiotechNet, Vol. 1, September, ABN 027

Streatfield, S. J., J. M. Jilka, E. E. Hood, D. D. turner, M. R. Bailey, J. M. Mayor, S. L. Woodard, K. K. Beifuss, M. E. Horn, D. E. Delaney, I. R. tizard and J. A. Howard 2001 Plant-based vaccines: unique advantages Vaccine 19:2742-2748

Streatfield, S.J., J.M. Mayor, D.K. Barker, C. Brooks, B.J. Lamphear, S.L. Woodard, K.K. Beifuss, D.V.Vicuna, L.-A. Massay, M.E. Horn, D.E. Delaney, Z.L. Nikolov, E.E. Hood, J.M. Jilka and J.A. Howard 2002 Development of an edible subunit vaccine in corn against enterotoxigenic strains of Escherichia coli. In Vitro Cell. Dev. Biol.-Plant 38:11-17 (Highlighted in 'In Vitro Report')

Hood, E.E., S.L. Woodard and M.E. Horn 2002 Antibody manufacturing in transgenic plants: Myths and Realities Current Opinion in Biotechnology, 13, 630-635

Lamphear, B.J., Streatfield, S.J., Jilka, J.M., Brooks, C.A., Barker, D.K., turner, D.D., Delaney, D.E., Garcia, M., Wiggins, B., Woodard, S.L., Hood, E.E., tizard, I.R., Lawhorn, B. and Howard, J.A. 2002 Delivery of subunit vaccines in maize seed. J. Controlled Release, 85. 169-180

Streatfield, S.J., Lane, J.R., Brooks, C.A., Barker, D.K., Poage, M.L., Mayor, J.M., Lamphear, B.J., Drees, C.F., Jilka, J.M., Hood, E.E. and Howard, J.A. 2003 Corn as a production system for human and animal vaccines Vaccine 21:812-815

Streatfield, S.J., M.E. Magallanes-Lundback, K.K. Beifuss, C.A. Brooks, R.L. Harkey, R.t. Love, J. Bray, J.A. Howard, J.M. Jilka and E.E. Hood. 2004 Analysis of the maize polyubiquitin-1 promoter heat shock elements and generation of promoter variants with modified expression characteristics. transgenic Research. In press

Hood, E.E., A. Kusnadi, Z. Nikolov and J.A. Howard. 1999. Molecular Farming of Industrial Proteins from transgenic Maize. In: P. Kolodziejczyk, Shahidi, et al eds., Chemicals via Higher Plant Bioengineering, Kluwer Academic/Plenum Publishers, N.Y.

Delaney, D., J. Jilka, D. Barker, P. Irwin, M. Poage, S. Woodard, M. Horn, A. Vinas, K. Beifuss, M. Barker, B. Wiggins, C. Drees, R. Harkey, Z. Nikolov, E. Hood and J. Howard. 2003. "Production of aprotinin in transgenic maize seeds for the pharmaceutical and cell culture markets" In: I. Vasil, Ed., Plant Biotechnology 2002 and Beyond, Proceedings of the 10th IAPtC&B Congress, Orlando, FL. Kluwer Academic Publishers, Dordrecht, the Netherlands. pp. 393-394.

Nutrition & Human Health

R. Michael Raab. 2006 "Integrating Genome Scale tools for Studying Energy Homeostasis," Nutrition & Metabolism, submitted.

R. Michael Raab, John Bullen Jr., Joanne Kelleher, Christos Mantzoros, Gregory Stephanopoulos. 2005. "Regulation of Mouse Hepatic Genes in Response to Diet Induced Obesity, Insulin Resistance and Fasting," Nutrition & Metabolism, 2:15.

Matthew Wong, R. Michael Raab, Isidore Rigoutsos, Joanne Kelleher, Gregory Stephanopoulos. 2004. "Metabolic and transcriptional Patterns Accompanying Glutamine Depletion and Repletion in Mouse Hepatoma Cells: A Model for Physiological Regulatory Networks," Physiological Genomics, 16(2):247-255.

Fubao Wang, R. Michael Raab, Michael W. Washabaugh, and Barry C. Buckland. 2000. "Gene therapy and Metabolic Engineering," Metabolic Engineering, 2:126-139.

Martin L Olsson, Cheryl Hill, Humberto de la Vega, Peter Liu, Mark R. Stroud, Jean Valdinocci, Steven Moon, Henrik Clausen , and Margot S. Kruskall 2004. Universal Red Blood Cells - Enzymatic Conversion of Blood Group A and B Antigens. transfusion Clinique et Biologique 11, 33 - 39.

K. Jensen, G. Jung, I. Rigoutsos, & G. Stephanopoulos. (2003) "In Silico Discovery and Design of Antimicrobial Peptides," Proceedings of the American Institute of Chemical Engineers Annual Meeting.

Ladisch MR, Kohlmann KL. 1992. Recombinant human insulin. Biotechnol Prog. Nov-Dec;8(6):469-78. Review.

Kubasek, W.L., B.W. Shirley, A. Mckillop, H.M. Goodman, W. Briggs, and F.M. Ausubel (1992) Regulation of flavonoid biosynthetic genes in germinating Arabidopsis seedlings. Plant Cell 4:1229-1236.

Pegues, D.A., C. Colby, P.L. Hibberd, S.B. Calderwood, L. Glassner-Cohen, F.M. Ausubel, S.B. Calderwood and D.C. Hooper (1998) the epidemiology of resistance to ofloxacin and oxacillin among clinical coagulase-negative staphylococcal isolates: analysis of risk factors and strain types. Clinical Infectious Diseases 26:72-79.

Kudva, I.t., P.S. Evans, N.t. Perna, t.J. Barrett, G.J. DeCastro, F.M. Ausubel, F.R. Blattner and S.B. Calderwood (2002) Polymorphic amplified typing sequences provide a novel approach to Escherichia coli O157:H7 strain typing. J. Clin. Microbiol. 40:1152-1159.

Drenkard, E. and F.M. Ausubel (2002) Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation. Nature 416:740-743.

tan, M.-W. and F.M. Ausubel (2000) Caenorhabditis elegans: A model genetic host to study Pseudomonas aeruginosa pathogenesis. Current Opinion in Microbiology 3:29-34.

Plant transformation

R.V.Sairam, Parani M., Franklin G., Lifeng Z., Smith B., Mac Dougall, J., Wilber C., Sheiki H., Kashikar N., Meeker K., Al-Abed D., Berry K., Chen H., Vierling R., Goldman S.L. Shoot meristem: An ideal explant for Zea mays transformation. Genome, v.46, p.323-329, 2003.

Diaa Al-Abed, Rudrabhatla, Sairam, talla, Reddy and Goldman, Stephen. 2006. Split-seed: A new tool for maize researchers. Planta, 223:1355-1360

R.V. Sairam, N. Seetharama and t.S. Rani. Regeneration of sorghum from shoot tip cultures and field performance of the progeny. Plant Cell, tissue and Organ Culture 61: 169-173, 2000.

R.V.Sairam, N Seetharama, t. Shyamala and P.S. Devi. Plant regeneration from scutella of immature embryos of diverse sorghum genotypes. Cereal Research Communications. Vol. 28, No3. 279-285, 2000.

R.V.Sairam, N. Seetharama, Devi. P.S, Verma A, U R Murty, N Seetharama and Potrykus.I. Plant regeneration from mesophyll protoplasts of Sorghum. Plant Cell Reports 18: 12, 972-977, 1999.

P.K. Mythili, t.S. Rani, R.V. Sairam, V.D. Reddy, D. Harshavardhan and N. Seetharama. Sorghum tissue culture and transformation research. Sorghum tissue Culture & transformation : 7: 51-56, 2004.

R.V. Sairam, Franklin, G., Carpenter, L., Al.Abed, D., Abou Alawai, W., Parani, M., Goldman, S.L. Factors influencing regeneration of soybean from mature and immature cotyledons. Plant Growth Regulation : 43: 73-79, 2004.

R.V.Sairam, G. Franklin, R. Hassel, B. Smith, K. Meeker, N. Kashikar, M. Parani, D. Al. Abed, S. Ismail, K. Berry & S.L. Goldman. A study on the effect of genotypes, plant growth regulators and sugars in promoting plant regeneration via organogenesis from soybean cotyledonary nodal callus. Plant Cell, tissue and Organ Culture : 75: 79-85, 2003.

R.V.Sairam, Wilber, C., Franklin, J., Smith, B., Frutiger, K., Bazil, J., Blakey, C.A., Vierling, R., and Goldman, S.L. High frequency callus induction and plant regeneration in tripsacum dactyloides (L.), In Vitro Plant Cell Dev.Biol.-Plant. 38:435-440, 2002.

Hood, E.E., G. Jen, L. Kayes, J. Kramer, R.t. Fraley, and M.-D. Chilton 1984 Restriction endonuclease map of pti Bo542, a potential ti plasmid vector for genetic engineering of legumes. Bio/technology 2:702-708

Chilton, W.S., E.E. Hood and M.-D. Chilton 1985 Absolute stereochemistry of leucinopine, a crown gall opine. Phytochem. 24:221-224

Chilton, W.S., E.E. Hood, K.L. Rinehart, Jr., and M.-D. Chilton 1985 L,L-succinamopine: An epimeric crown gall opine. Phytochem. 24:2945-2948

Hood, E.E., G.L. Helmer, R.t. Fraley and M.-D. Chilton 1986 the non-t-DNA portion of ptiBo542 is responsible for the hypervirulence of Agrobacterium tumefaciens A281. J.Bacteriol. 168:1291-1301

Hood, E.E., W.S. Chilton, M.-D. Chilton and R.t. Fraley 1986 t-DNA and opine synthetic loci in tumors incited by Agrobacterium tumefaciens A281 on soybean and alfalfa plants. J. Bacteriol. 168:1283-1290

Hood, E.E., R.t. Fraley, and M.-D. Chilton 1987 Virulence of Agrobacterium tumefaciens strain A281 on legumes. Plant Physiol. 83:529-534

Hood, E.E., D.H. Clapham, I. Ekberg and t. Johansson 1990 t-DNA presence and opine production in tumors of Picea abies (L.) Karst induced by Agrobacterium tumefaciens A281. Plant Mol. Biol. 14:111-117

Clapham, D., I. Ekberg, G. Eriksson, E.E. Hood, and L. Norell 1990 Within-population variation in susceptibility to Agrobacterium tumefaciens A281 in Picea abies (L.) Karst. theor. Appl. Genet. 79:654-656

Hood, E.E., S.B. Gelvin, L.S. Melchers, and A. Hoekema 1993 New Agrobacterium helper plasmids for gene transfer to plants. trans. Res. 2:208-218

Smith, R.H., and E.E. Hood 1994 Agrobacterium tumefaciens transformation of monocotyledons Crop Science 35:301-309

Hood, E.E., 1999. Analysis of Plant transformation Systems in "Application of transformation technology in plant breeding". Published as Proceedings of the 30th Annual Symposium of the Korean Breeding Society, held in Suwon, Korea, November 18-21, 1999. pp. 33-38.

Olszewski, N., D.V. Voytas, J. Hu, J. Chory, and F.M. Ausubel (1987) Construction and testing of vectors for the cloning of plant genes by phenotypic complementation. In: Molecular Biology of Plant Growth Control (J.E. Fox and M. Jacobs, eds.), Alan R. Liss, New York, pp. 145-155.

Olszewski, N.E., F.B. Martin, and F.M. Ausubel (1988) Specialized binary vector for plant transformation: expression of the Arabidopsis thaliana AHAS gene in Nicotiana tabacum. Nucleic Acids Research 16:10765-10781.

Plant Cell Wall Biology

Keegstra K, Walton J. 2006. Plant science. Beta-glucans--brewer's bane, dietician's delight. Science. 311(5769):1872-3.

Liepman AH, Wilkerson CG, Keegstra K. 2005. Expression of cellulose synthase-like (Csl) genes in insect cells reveals that CslA family members encode mannan synthases. Proc Natl Acad Sci U S A. 102(6):2221-6

Girke t, Lauricha J, tran H, Keegstra K, Raikhel N. 2004. the Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism. Plant Physiol. 136(2):3003-8

Delgado IJ, Wang Z, de Rocher A, Keegstra K, Raikhel NV. 1998. Cloning and characterization of AtRGP1. A reversibly autoglycosylated arabidopsis protein implicated in cell wall biosynthesis. Plant Physiol. Apr;116(4):1339-50.

Faik A, Bar-Peled M, DeRocher AE, Zeng W, Perrin RM, Wilkerson C, Raikhel NV, Keegstra K (2000) Biochemical characterization and molecular cloning of an α-1,2-fucosyltransferase that catalyzes the last step of cell wall xyloglucan biosynthesis in pea. J Biol Chem 275: 15082-15089

Keegstra K, Raikhel N (2001) Plant glycosyltransferases. Curr Opin Plant Biol 4: 219-224

Perrin RM, DeRocher AE, Bar-Peled M, Zeng W, Norambuena L, Orellana A, Raikhel NV, Keegstra K (1999) Xyloglucan fucosyltransferase, an enzyme involved in plant cell wall biosynthesis. Science 284: 1976-1979

Perrin R, Wilkerson C, Keegstra K (2001) Golgi enzymes that synthesize plant cell wall polysaccharides: Finding and evaluating candidates in the genomic era. Plant Mol Biol 47: 115-130

Perrin RM, Jia Z, Wagner tA, O'Neill MA, Sarria R, York WS, Raikhel NV, Keegstra K (2003) Analysis of xyloglucan fucosylation in Arabidopsis. Plant Physiol 132: 768-778

Sarria R, Wagner tA, O'Neill MA, Faik A, Wilkerson CG, Keegstra K, Raikhel NV (2001) Characterization of a family of Arabidopsis genes related to xyloglucan fucosyltransferase1. Plant Physiol 127: 1595-1606

Vanzin GF, Madson M, Carpita NC, Raikhel NV, Keegstra K, Reiter W-D (2002) the mur2 mutant of Arabidopsis thaliana lacks fucosylated xyloglucan due to a lesion in fucosyltransferase AtFUt1. Proc Natl Acad Sci USA 99: 3340-3345

Faik A, Price NJ, Raikhel NV, Keegstra K (2002) An Arabidopsis gene encoding an α-xylosyltransferase involved in xyloglucan biosynthesis. Proc Natl Acad Sci USA 99: 7797-7802

Hood, E.E., Q.X. Shen and J.E. Varner 1988 A developmentally regulated hydroxyproline-rich glycoprotein in maize pericarp cell walls Plant Physiol. 87:138-142

Hood, E.E., K.R. Hood and S.E. Fritz 1991 Hydroxyproline-rich glycoproteins in cell walls of pericarp from maize. Plant Science. 79:13-22

Fritz, S.E., K.R. Hood, and E.E. Hood 1991 Localization of soluble and insoluble fractions of hydroxyproline-rich glycoproteins during maize kernel development. J. Cell Sci. 98:545-550

Hood, K.R., R.A. Baasiri, S.E. Fritz, and E.E. Hood 1991 Biochemical and tissue print analyses of hydroxyproline-rich glycoproteins in cell walls of sporophytic maize tissues. Plant Physiol. 96:1214-1219

Murphy, J.M. and E.E. Hood 1993 Molecular basis of the size heterogeneity of extensin from two maize vatieties. Plant Mol. Biol. 21:885-893

Hood, E.E., J.M. Murphy and R.C. Pendleton 1993 Molecular characterization of maize extensin expression. Plant Mol. Biol. 23:685-695

Hood, E.E., K.R. Hood and S.E. Fritz. 1992. Localization of Extensin in Maize Cell Walls Using Monoclonal Antibodies. In: P. Reid, R. Pont-Lezica, E. del Campillo and R. taylor, eds., tissue Printing, tools for the Study of Anatomy, Histochemistry and Gene Expression. Academic Press, Inc., San Diego. pp. 32-35.

Varner, J.E. and E.E. Hood. 1988. Gel properties of the cell wall. In: J.E. Varner, (ed), Developmental Biology Series: Self assembling architecture. Alan R. Liss, Inc., New York. pp. 97-103.

Hood, E.E. 1996. Biochemical, immunological and molecular characterization of extensin. In: H.F. Linskins and J.F. Jackson, eds., Modern Methods of Plant Analysis. Vol. 17: Plant Cell Wall Analysis. pp.117-128.

Gatenby AA, Lubben tH, Ahlquist P, Keegstra K. 1988. Imported large subunits of ribulose bisphosphate carboxylase/oxygenase, but not imported beta-AtP synthase subunits, are assembled into holoenzyme in isolated chloroplasts. EMBO J. May;7(5):1307-1314.

Cline K, Keegstra K. 1983. Galactosyltransferases Involved in Galactolipid Biosynthesis Are Located in the Outer Membrane of Pea Chloroplast Envelopes. Plant Physiol. Feb;71(2):366-372.

Keegstra K, talmadge KW, Bauer WD, Albersheim P. 1973. the Structure of Plant Cell Walls: III. A Model of the Walls of Suspension-cultured Sycamore Cells Based on the Interconnections of the Macromolecular Components. Plant Physiol. Jan;51(1):188-197.

Bauer WD, talmadge KW, Keegstra K, Albersheim P. 1973. the Structure of Plant Cell Walls: II. the Hemicellulose of the Walls of Suspension-cultured Sycamore Cells. Plant Physiol. Jan;51(1):174-187.

talmadge KW, Keegstra K, Bauer WD, Albersheim P. 1973. the Structure of Plant Cell Walls: I. the Macromolecular Components of the Walls of Suspension-cultured Sycamore Cells with a Detailed Analysis of the Pectic Polysaccharides. Plant Physiol. Jan;51(1):158-173.

English PD, Maglothin A, Keegstra K, Albersheim P. 1972. A Cell Wall-degrading Endopolygalacturonase Secreted by Colletotrichum lindemuthianum. Plant Physiol. Mar;49(3):293-298.

Keegstra K, Albersheim P. 1970. the Involvement of Glycosidases in the Cell Wall Metabolism of Suspension-cultured Acer pseudoplatanus Cells. Plant Physiol. Jun;45(6):675-678.

Plant Physiology

R.V. Sairam, Seetharama, N., Nwanze, K.F., and Subramanian, V. 1997. Biotechnology and sorghum improvement for insect resistance. Pages 127-131, In: Plant resistance to insects in sorghum (Eds: Sharma, H.C and Faujdar Singh).

Parani Madasamy, R.V. Sairam, Rachel Myers, Heatherbea Weirich, Bruce Smith, Douglas W. Leaman, S.L. Goldman. 2004 Microarray analysis of nitric oxide responsive transcripts in arabidopsis. Plant Biotechnology Journal : 2: 359-366.

Quinto C., de la Vega H., Flores M., Fernández L., Soberón G., and R. Palacios 1982. Reiteration of Nitrogen Fixation Gene sequences in Rhizobium phaseoli Nature 299 : 724-726

R. Palacios, C. Quinto, J. Leemans, M. Flores, H. de la Vega and E. Martínez 1985. Reiterated Nitrogenase Reductase genes in Rhizobium phaseoli. Molecular form and Function of the Plant Genome. (Eds.Louis van Vloten-Doting, Gert S.P.Groot, and timothy C. Hall). Plenum Publishing Corporation

Quinto C., De la Vega H., Flores M., Leemans J., Cevallos M.A., Pardo M.A., Azpiroz R., Girard M.de L., Calva E., and R. Palacios 1985. Nitrogenase Reductase: A functional multigene family in Rhizobium phaseoli. Proc Nat Acad Sci USA : 82 :1170 - 1174

R. Palacios, C. Quinto, H. de la Vega, M. Flores, L. Fernández, M. Hernández, t. Ballado, and G. Soberón-Chávez 1983. General Organization of Nitrogen Fixation Genes in Rhizobium phaseoli Molecular Genetics of the Bacteria Plant Interaction (ed. A. Pühler) Springer-Verlag Berlin Heidelberg

Hood, E.E., S. Armour, J. Ownby, A. Handa, and R. Bressan 1979 Cyclic adenosine 3', 5'-monoshosphate in Anabaena variabilis: Effects of nitrogen starvation Biochem Biophys. Acta 588:193-200

Ownby, J., M. Shannahan, and E.E. Hood 1979 Protein synthesis and degradation in Anabaena during nitrogen starvation. J. of Gen Microbiol. 110:225-261

Lanoue, K.Z., P.G. Wolf, S. Browning and E.E. Hood 1996 Phylogenetic analysis of restriction site variation in wild and cultivated Amaranthus species (Amaranthaceae). theor. Appl. Genet. 93:722-732

Fitzgerald, M.S., E.V., Shakirov, E.E. Hood, t.D. McKnight and D.E. Shippen 2001 Different modes of de novo telomere formation by plant telomerase. Plant J. 26(1): 77-87

Constan D, Patel R, Keegstra K, Jarvis P (2004) An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis. Plant J 38: 93-106 (Online: doi:10.1111/j.1365-313X.2004.02024.x

Chou M-L, Fitzpatrick LM, tu S-L, Budziszewski G, Potter-Lewis S, Akita M, Levin JZ, Keegstra K, Li H-m (2003) tic40, a membrane-anchored co-chaperone homolog in the chloroplast protein translocon. EMBO J 22: 2970-2980

Davila-Aponte J, Inoue K, Keegstra K (2003) two chloroplastic protein translocation components, tic110 and toc75, are conserved in different plastid types from multiple plant species. Plant Mol Biol 51 (2): 175-181

Inoue K, Keegstra K (2003) A polyglycine stretch is necessary for proper targeting of the protein translocation channel precursor to the outer envelope membrane of chloroplasts. Plant J 34: 661-669

Fitzpatrick LM, Keegstra K (2001) A method for isolating a high yield of Arabidopsis chloroplasts capable of efficient import of precursor proteins. Plant J 27: 59-65

Jackson-Constan D, Keegstra K (2001) Arabidopsis genes encoding components of the chloroplastic protein import apparatus. Plant Physiol 125: 1567-1576

Jackson-Constan D, Akita M, Keegstra K (2001) Molecular chaperones involved in chloroplast protein import. Biochim Biophys Acta 1541: 102-113

Keegstra K, Cline K (1999) Protein import and routing systems of chloroplasts. Plant Cell 11: 557-570

Jackson D, Froehlich JE, Keegstra K (1998) the hydrophilic domain of tic110, an inner envelope membrane component of the chloroplastic protein translocation apparatus, faces the stromal compartment. J Biol Chem 273: 16583-16588

Nielsen E, Akita M, Davila-Aponte J, Keegstra K (1997) Stable association of chloroplastic precursors with protein translocation complexes that contain proteins from both envelope membranes and a stromal Hsp100 molecular chaperone.  EMBO J 16: 935-946

Akita M, Nielsen E, Keegstra K (1997) Identification of protein transport complexes in the chloroplastic envelope membrane via chemical cross-linking.  J Cell Biol 136: 983-994

Ruvkun, G.B., and F.M. Ausubel (1980) Interspecies homology of nitrogenase genes. Proc. Natl. Acad. Sci. USA 77:191-195.

Mitchell, A.Z., M.R. Hanson, R.C. Skvirsky, and F.M. Ausubel (l980) Anther culture of Petunia: Genotypes with high frequency of callus, root, or plantlet formation. Z. Pflanzenphysiol. 100:131-146.

Martineau, B., M.R. Hanson, and F.M. Ausubel (1981) Effect of charcoal and hormones on anther culture of Petunia and Nicotiana. Z. Pflanzenphysiol. 102:109-116.

Skvirsky, R.C., M.R. Hanson, and F.M. Ausubel (1982) A genetic approach for studying plant regeneration: analysis of cytokinin-controlled shoot morphogenesis from tissue explants of Petunia hybrida. In: Variability in Plants Regenerated from tissue Culture (E. Earle and Y. Demarly, eds.) Praeger, New York, pp. 101-120.

Earl, C.D., and F.M. Ausubel (1982) Creating plants that feed themselves. technology Review 85:65-71.

Ausubel, F.M. (1982) Molecular genetics of symbiotic nitrogen fixation. Cell 29:1-2.

Hirsch, A.M., S.R. Long, M. Bang, H. Haskins, and F.M. Ausubel (1982) Structural studies of alfalfa roots infected with nodulation mutants of Rhizobium meliloti. J. Bacteriol. 151:411-419.

Wilson, K.J., A.M. Hirsch, J.D.G. Jones, and F.M. Ausubel (1983) Agrobacterium containing cloned Rhizobium meliloti nodulation genes forms ineffective nodules on alfalfa. In: Advances in Gene technology: Molecular Genetics of Plants and Animals (K. Downey, R.W. Voellmy, F. Ahmad and J. Schultz, eds.) Academic Press, New York, pp. 233-253.

Lang-Unnasch, N., and F.M. Ausubel (1984) Alfalfa nodulins from effective and ineffective symbioses. In: Advances in Nitrogen Fixation Research (C. Veeger and W.E. Newton, eds.) Nijhoff Junk, the Hague, p. 600.

Skvirsky, R.C., M.R. Hanson, and F.M. Ausubel (1984) Intraspecific genetic variation in cytokinin-controlled shoot morphogenesis from tissue explants of Petunia hybrida. Plant Science Lett. 35:237-246.

Lang-Unnasch, N., and F.M. Ausubel (1985) Nodule-Specific polypeptides from effective alfalfa root nodules and from ineffective nodules lacking nitrogenase. Plant Physiol. 77:833-839.

Chory, J., D.V. Voytas, N.E. Olszewski, and F.M. Ausubel (1987) Gibberellin-induced changes in the populations of translatable mRNAs and accumulated polypeptides in dwarfs of maize and pea. Plant Physiology 83:15-23.

Dunn, K., R. Dickstein, R. Feinbaum, B.K. Burnett, t.K. Peterman, G. thoidis, H.M. Goodman, and F.M. Ausubel (1988) Developmental regulation of nodule-specific genes in alfalfa root nodules. Molecular Plant-Microbe Interactions 1:66-74.

Richards, E. J., and F.M. Ausubel (1988) Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53:127-136.

Feinbaum, R., and F.M. Ausubel (1988) transcriptional regulation of the Arabidopsis thaliana chalcone synthase gene. Molecular and Cellular Biology 8:1985-1992.

Dickstein, R., t. Bisseling, V. Reinhold, and F.M. Ausubel (1988) Expression of nodule-specific genes in alfalfa root nodules blocked at an early stage of development. Genes & Development 2:677-687.

Voytas, D.V., and F.M. Ausubel (1988) A copia-like retrotransposon family in Arabidopsis thaliana. Nature 336:242-244.

Chory, J., C.A. Peto, R. Feinbaum, L. Pratt, and F.M. Ausubel (1989) Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell 58:991-999.

Konieczny, A., D.V. Voytas, and F.M. Ausubel (1990) Retrotransposable elements in Arabidopsis thaliana. In: Plant Gene transfer (C.J. Lamb and R.N. Beachy, eds.) Wiley-Liss, New York, pp. 65-70.

Schott, E.J., K.R. Davis, X. Dong, M. Mindrinos, P. Guevara, and F.M. Ausubel (1990) Pseudomonas syringae infection of Arabidopsis thaliana as a model system for studying plant-bacterial interactions. In: Pseudomonas: Biotransformation, Pathogenesis, and Evolving Biotechnology (S. Silver, A.M. Chakrabarty, B. Iglewski, and S. Kaplan, eds.) American Society for Microbiology, Washington, D.C. pp. 82-90.

Feinbaum, R.L., G. Storz, and F.M. Ausubel (1991) High intensity and blue light regulated expression of chimeric chalcone synthase genes in transgenic Arabidopsis thaliana plants. Molec. Gen. Genet. 226:449-456.

Konieczny, A., D.F. Voytas, M.P. Cummings, and F.M. Ausubel (1991) A Superfamily of Arabidopsis thaliana retrotransposon. Genetics 127:801-809.

Ausubel, F.M., K.R. Davis, E.J. Schott, X. Dong, and M. Mindrinos (1991) Identification of signal transduction pathways leading to the expression of Arabidopsis thaliana defense genes. In: Advances in Molecular Genetics of Plant-Microbe Interactions (H. Hennecke and D.P.S. Verma, eds.) Kluwer Academic Publishers, Dordrecht, pp. 357-364.

Richards, E.J., H.M. Goodman, and F.M. Ausubel (1991) the centromere regions of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucleic Acids Research 19:3351-3357.

Keith, B., X. Dong, F.M. Ausubel, and G.R. Fink (1991) Differential induction of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase genes in Arabidopsis thaliana by wounding and pathogen attack. Proc. Natl. Acad. Sci. USA 88:8821-8825.

Sun, t.-P., H.M. Goodman, and F.M. Ausubel (1992) Cloning the Arabidopsis GA1 locus by genomic subtraction. Plant Cell 4:119-128.

Melan, M.A., X. Dong, M.E. Endara, K.R. Davis, F.M. Ausubel, and t.K. Peterman (1993) An Arabidopsis thaliana lipoxygenase gene can be induced by pathogens, abscisic acid and methyl jasmonate. Plant Physiol. 101:441-450.

Greenberg, J.t. and F.M. Ausubel (1993) Arabidopsis mutants compromised for the control of cellular damage during pathogenesis and aging. Plant Journal 4:327-341.

Konieczny, A. and F.M. Ausubel (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant Journal 4:403-410.

Yu, G.-L., F. Katagiri, and F.M. Ausubel (1993) Arabidopsis mutations at the RPS2 locus result in loss of resistance to Pseudomonas syringae strains expressing the avirulence gene avrRpt2. Molecular Plant-Microbe Interactions 6:434-443.

Susek, R.E., F.M. Ausubel, and J. Chory (1993) Signal transduction mutants of Arabidopsis uncouple CAB and RBCS gene expression from chloroplast development. Cell 74:787-799.

Mindrinos, M.N., G.-L. Yu and F.M. Ausubel (1993) Arabidopsis thaliana as a model system to study host pathogenic bacterial interaction. In: Arabidopsis thaliana as a Model for Plant-Pathogen Interactions (K.R. Davis and R. Hammerschmidt, eds.) APS Press, St. Paul, Minnesota, pp. 37-48.

Greenberg, J.t., A. Guo, D.F. Klessig, and F.M. Ausubel (1994) Programmed cell death in plants: A pathogen-triggered response activated coordinately with multiple defense functions. Cell 77:551-563.

Glazebrook, J. and F.M. Ausubel (1994) Isolation of phytoalexin-deficient mutants of Arabidopsis thaliana and characterization of their interactions with bacterial pathogens. Proc. Natl. Acad. Sci. USA 91:8955-8959.

Hanfstingl, U., A. Berry, E.A. Kellog, J.t. Costa, W. Rüdiger, and F.M. Ausubel (1994) Haplotype divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: Roles for both balancing and directional selection? Genetics 138:811-828.

Mindrinos, M., F. Katagiri, G.-L. Yu, and F.M. Ausubel. (1994) the A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell 78:1089-1099.

Mindrinos, M., F. Katagiri, G. Glazebrook, J. and F.M. Ausubel, F (1994). Identification and characterization of an Arabidopsis ecotype which fails to mount a hypersensitive response when infiltrated with Pseudomonas syringae strains carrying avrRpt2. In: Advances in Molecular Genetics of Plant-Microbe Interactions, Vol. 3 (M. Daniels, J. A. Downie, and A.E. Osbourn, eds.) Kluwer Academic Publishers, Dordrecht, pp. 253-260.

Staskawicz, B.J., F. M. Ausubel, B.J. Baker, J.G. Ellis and J.D.G. Jones (1995) Molecular Genetics of Plant Disease Resistance. Science 268:661-667.

Shirley, B.W., W.L. Kubasek, G. Storz, E. Bruggemann, M. Koornneef, F.M. Ausubel and H.M. Goodman (1995) Analysis of Arabidopsis mutant deficient in flavonoid biosynthesis. Plant Journal 8:659-671.

Reuber, t.L. and F.M. Ausubel (1996) Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 8:241-249.

Glazebrook, J., E.E. Rogers and F.M. Ausubel (1996) Isolation of Arabidopsis mutants with enhanced disease susceptibility by direct screening. Genetics 143:973-982.

Glazebrook, J., M. Zook, F. Mert, I. Kagan, E.E. Rogers, I.R. Crute, E.B. Holub, R. Hammerschmidt and F. M. Ausubel (1997) Phytoalexin-deficient mutants of Arabidopsis reveal that PAD4 encodes a regulatory factor and that four PAD genes are required for downy mildew resistance. Genetics 146:381-392.

Kubasek, W.L., F.M. Ausubel and B.W. Shirley (1998) A light-independent developmental mechanism potentiates flavonoid gene expression in Arabidopsis seedlings. Plant Molecular Biology 37:217-223.

Plotnikova, J.M., t.L. Reuber, F.M. Ausubel and D.H. Pfister (1998) Powdery mildew pathogenesis of Arabidopsis thaliana. Mycologia 90:1009-1016.

Cho R.J., M. Mindrinos, D.R. Richards, R.J. Sapolsky, M. Anderson, E. Drenkard, J. Dewdney, t.L. Reuber, M. Stammers, N. Federspiel, A. theologis, W.-H. Yang, E. Hubbell, M. Au, E.Y. Chung, D. Lashkari, B. Lemieux, C. Dean, R.J. Lipshutz, F.M. Ausubel, R.W. Davis, and P.J. Oefner (1999) Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nature Genetics 23:203-7.

Jirage, D., t.L. tootle, t.L. Reuber, L.N. Frost, B.J. Feys, J.E. Parker, F.M. Ausubel and J. Glazebrook (1999) Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling. Proc. Natl. Acad. Sci. USA 96:13583-88.

Sanchez, A.C., L.L. Ilag, D. Yang, D. S. Brar, F. Ausubel, G.S. Khush, M. Yano, t. Sasaki, Z. Li, and N. Huang. (1999) Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice. theoretical and Applied Genetics 98:1022-1028.

Asai, t., J.M. Stone, J.E. Heard, Y Kovtum, P. Yorgey, J. Sheen and F.M. Ausubel (2000) Fumonisin B1-induced cell death in Arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways. Plant Cell 12:1823-1826.

Dewdney, J., t.L. Reuber, M.C. Wildermuth, A. Devoto, J. Cui, L.M. Stutius, E.P. Drummond, and F.M. Ausubel (2000) three unique mutants of Arabidopsis identify eds loci required for limiting growth of a biotrophic fungal pathogen. Plant Journal 24:205-218.

Aballay, A., P. Yorgey and F.M. Ausubel (2000) Salmonella typhimurium proliferates and establishes a persistent infection in the intestine of Caenorhabditis elegans. Current Biology 10:1539-1542.

Clarke, J.D., S.M. Volko, H. Ledford, F.M. Ausubel and X. Dong (2000) Roles of salicylic acid, jasmonic acid and ethylene in cpr-induced resistance in Arabidopsis. Plant Cell 12:2175-2190.

Ausubel, F.M. (2000) Arabidopsis Genome: A Milestone in Plant Biology. Plant Physiol. 124:1451-1454.

Drenkard, E., B.G. Richter, S. Rozen, L.M. Stutius, N.A. Angell, M. Mindrinos, R.J. Cho, P.J. Oefner, R.W. Davis and F.M. Ausubel (2000) A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol. 124:1483-1492.

tao, Y., F. Yuan, R.t. Leister, F.M. Ausubel and F. Katagiri (2000) Mutational analysis of the Arabidopsis nucleotide binding site-leucine-rich repeat resistance gene RPS2. Plant Cell 12:2541-2554.

Asai, t., G. tena, J. Plotnikova, M.R. Willmann, W.-L. Chiu, L. Gomez-Gomez, t. Boller, F.M. Ausubel and J. Sheen (2002) MAP kinase signaling cascade in Arabidopsis innate immunity. Nature 415:977-983.

Alonso, J.M., A. N. Stepanova, R. Solano, E. Wisman, S. Ferrari, F. M. Ausubel and J.R. Ecker (2003) New components of the ethylene signaling pathway uncovered by a novel mutant screen. Proc. Natl. Acad. Sci. USA 100:2992-2997.